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Principal Investigator

Zheng Jie

郑杰

Associate Professor

SIST, ShanghaiTech University

Ph.D., Computer Science & Engineering, University of California, Riverside, USA

B.Eng., Computer Science & Engineering, Zhejiang University, China

Curriculum Vitae


Research Assistant

Wang Li

王丽

M.S. Central South University


Ph.D. Student

Zhang Ke

张可

Grade 2017

B.S. Xi‘an University of Technology


Master student

Zhu Lin

朱琳

Grade 2019

B.S. Chongqing University

Master student

Wang Jie

汪洁

Grade 2019

B.S. University of Electronic Science and Technology of China

Master student

Dai Xin Nan

戴昕男

Grade 2019

B.S. Southwest University Of Science And Technology

Master student

Xu Fan

徐凡

Grade 2020

B.S. Shanghai Maritime University

Master student

Wang Shi Ke

王诗珂

Grade 2020

B.S. East China University of Science and Technology

Master student

Feng Yi Miao

冯艺苗

Grade 2020

B.S. Wuhan Institute of Technology

Master student

Zhang Cong

张淙

Grade 2020

B.S. Hainan university

Master student

Zhao Lei

赵磊

Grade 2020

B.S. Southeast University

Master student

Jin Jia Chun

金佳纯

Grade 2020

B.S. ShanghaiTech University

Master student

Yang Bei Yuan

杨贝媛

Grade 2021

B.S. ShanghaiTech University

Master student

Liu Xin

刘鑫

Grade 2021

B.S. China Pharmaceutical University

Master student

Sun Zhi Gang

孙志刚

Grade 2021

B.S. ShanghaiTech University


Undergraduate student

Jiang Yi Ting

蔣依婷

Undergraduate student

Sheng Zi Yang

盛子洋

Undergraduate student

Yu Jia Le

虞佳乐

Undergraduate student

Li Yun Yang

李云洋


Alumni (partial list)

 

Postdoc Fellows (at Nanyang Technological University, Singapore):

Dr. Piyushkumar MUNDRA (Jan. 2013 - Jun. 2013): currently Computational Biolost at Cancer Research UK, Manchester Institute, UK

Dr. WU Min (Jul. 2012 - May 2013): currently Research Scientist at Institute for Infocomm Research (I2R), A*STAR, Singapore

Dr. ZHAO Lina (Research Associate, Sept. 2013 - Mar. 2014; Postdoc, Mar. 2014 - May 2014): currently Resarch Fellow at University of Southern California, USA

Dr. LIU Hui (visiting scholar, Oct. 2014 - Nov. 2015): currently Associate Professor, Changzhou University, China

Dr. ZHANG Xiaomeng (May 2014 - Jan. 2017): currently Research Fellow, SIgN, A*STAR, Singapore

Dr. MA Lichun (Oct. 2016 - Oct. 2017): currently Research Fellow at National Cancer Institute, NIH, USA

Dr. CHONG Ket Hing (May 2015 - May 2018, PhD, Lincoln University, New Zealand): currently Research Fellow at Toronto University, Canada

 

Former PhD students (at NTU):

Mr. Fransiskus Xaverius Ivan (PhD student, graduated May 2014, jointly with Prof Jagath C. Rajapakse of SCSE, NTU,
Prof Vincent Chow of NUS and Prof Roy Welsch of MIT, in Singapore-MIT Alliance Program)
PhD thesis: Systems-level host response to low and high virulent influenza A (H3N2) virus infections
Current position: Lecturer, Surya University, Indonesia

Ms. CHEN Haifen (PhD student, Aug. 2011 - Aug. 2015)
PhD thesis: Systems modeling and network inference for genetic and epigenetic regulation of gene expression
Current position: Postdoc Fellow, McGill University, Canada

Mr. ZHANG Fan (PhD student, Jan. 2012 - Jan. 2016)
PhD thesis: Computational prediction of cell fates by systems modeling of cellular signaling pathways
Current position: Postdoc Fellow, Genome Institute of Singpore, A*STAR, Singapore

Mr. Shital Kumar MISHRA (Aug. 2012 - Aug. 2016)
PhD project: Machine learning methods for predicting cancer drug effects from signaling and cell fate data
Current position: Postdoc Fellow, Soochow University, China

Ms. GUO Jing (Aug. 2013 - Dec. 2017, SCSE, NTU; jointly with Dr. Vivek Tanavde, BII, A*STAR, Singapore)
PhD project: Mathematical modeling and simulation of stem cell differentiation and reprogramming by Waddington’s epigenetic landscape
Current position: Data Scientist, Shopee Singapore

Mr. Paolo Alberto LORENZINI (Jan. 2014 - May 2018, jointly with Prof Xavier Roca, SBS, NTU)
PhD project: Global analysis of alternative splicing upon differentiation of human monocytes

Ms. Pritha DUTTA (Aug. 2017 - present, NTU)
PhD project: Computational modeling of cell death dysregulation in ageing related diseases

Ms. ZHOU Xinrui (Aug. 2015 - present, jointly with Prof Kwoh Chee Keong, SCSE, NTU)
PhD project: Computational virulence model with functional information for influenza viruses

 

Master of Science (MSc) students (at ShanghaiTech):

Mr. Wang Ke 王珂 (2018 - 2021)
Employer: SAIC General Motors Corporation (上汽通用汽车有限公司)

Mr. Wang Xin 王莘 (2018 - 2021)
Employer: Biren Technology (壁仞科技)

 

Master of Science (MSc) students (at NTU):

Ms. Vijayaraghavan Aadhitthya (MSc student, Aug. 2011 - July 2012)
Thesis: Detecting codon usage bias selected against protein misfolding

Mr. CHEN Hao (MSc student, Aug. 2012 - Aug. 2013; project officer Aug. 2013 - July 2014)
Thesis: Genome-wide discovery of DNA sequence motifs stimulating meiotic recombination hotspots

Mr. D.A. Kasun MADURANGA (MSc student, Jan. 2012 - Feb. 2013; project officer and research associate, Jan. 2012 - Jun. 2014)
Thesis: Performance comparison of dynamic Bayesian networks and Random forests ensemble on gene network inference

 

Project Officers / Research Associates (at NTU):

Ms. Aarthi MOHAN (jointly with Prof Mark Featherstone, SBS, NTU, Jan. 2014 - Dec. 2016)

Ms. LI Xue-Juan (Sept. 2012 - Jul. 2014)

Mr. LIU Xingliang (Aug. 2013 - Jun. 2014): currently Bioinformatics Specialist at Genome Institute of Singapore (GIS), A*STAR, Singapore

Ms. Chinh SU-TRAN (Jan. 2014 - Jun. 2014): currently Postdoc Fellow at Bioinformatics Institute (BII), A*STAR, Singapore

Mr. Alborzi Seyed Ziaeddin (Sept. 2013 - Jun. 2014): currently PhD Student at INRIA Nancy, France

Mr. WONG Mingjie (Sept. 2016 - Feb. 2017): currently Statistician at Department of Statistics, Ministry of Trade and Industry, Singapore

 

Underaduate students (at ShanghaiTech):

Mr. Huang ChenBin 黄辰彬

Mr. Wu XinLiang 乌鑫亮

Mr. Lin Pei 林沛

Mr. Meng Jie 蒙洁

 

Visiting students (at ShanghaiTech):

Mr. Jin Li
Chicago University

Ms. Sophia
Cornell University

Ms. Sui Ran (眭然)
Johns Hopkins University

 

 

 

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